Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932899.1_cds_XP_016479335.1_70884
CDS Infomation

[gene=LOC107800638] [db_xref=GeneID:107800638] [protein=pre-mRNA-processing protein 40A-like isoform X3] [protein_id=XP_016479335.1] [location=complement(join(74830..74976,75050..75337,75895..75997,76536..76588,76677..76784,80734..80832,80952..81068,81168..81221,81333..81425,81522..81602,82598..82703,82850..82884,83035..83121,83307..83384,83472..83540,83713..83811,84005..84077,84161..84516,84641..84658))] [gbkey=CDS]
Sequence

ATGCCTGATGAAGTCAAGTTGGCTCGTCAGAGTATGAAAGTGGATTTAGTCAAGGGATTG
GGAAAAGAAAGGGACAGTATTTCACACGCTTCTGATTTTGGATCCATTTCTGGTGTGAAA
ACATCACCCCTCAGTGCAAATGGTTCACCAGTCTCAGCACAAGGAGCTATGTCAAGCCCA
ATTGCTGTGGCACCAGTTTCTAACTTACCAACTATTGTGGCTTCAGAATCATCAAGTTTA
TCTGGTAATATTTCTTCCCTGACGATTGGTGCAGTCGAAATGCAGAATTCTTTGGAACCT
GCCTCGCCAGCTGTTGCTACTTCAGAGAAAAATGGAACAGCAGTAACCTTGGAAAATTCT
GTTGCAACACCAGTGACTAGTTCTGAGTTTCCTTCAGCTCAGGACTCAGTAGTGTATGAA
GATGGAGTTTCTCTGGAAAATACGGAGGAAGTTAAGAAAGATGCTACGGTATCTGAAACA
GGAAGTGCTACTCCATCAGAAGAGAAAACAGTTGAGCCGGGACCATTAGTTTATGAGAGC
AAAGCGGAGGCAAAGAGTGCATTCAAAATTCTTCTGGAGTCTGCAAATATTGGGTCTGAC
TGGACGTGGGATCAGGCAATGAGAGCAATAATCAATGACCGGAGATATGGTGCTCTAAAA
TCTCTTGGTGAGCGGAAGCAAGCTTTTAATGAGTATCTAAGCCATAAGAAAAAACTGGAA
GCTGAAGAGAGACGTATTAAACAGAAGAAAGCTCGGGAAGATTTCAGGATAATGTTAGAA
GAGTGCAAGGAGCTGGCACCATCTACAAGATGGAGTAAGGCAATCTCCATATTTGAACAT
GATGAACGTTTTAAAGCTGTTGAACGAGCAAAAGATCGTGAGGACCTTTTTGAAGATTAT
ATGGAGGAACTTGAGAAAAAGGAGCGTGCAAGGGCATTGGAGGAGCAGAAGCGCAACCGA
GTGGAGTATTTAGAATTTTTAAAATCCTGTGACTTTATTAAGGCCAGCAGCCAGTGGCGG
AAAGTTCAGGACCGCTTAGAAGATGATGAAAGATGCTCTTGCCTTGAGAAAATTGACCGT
TTGGAGATTTTCCAGGAATATATACGTGATTTAGAGAGGGAAGAGGAGGAGCACAGGAAA
CTGCGGATGGATGAAATGAGGAAAGCAGAACGTAAAAATCGTGATGAGTTCCGAAAACTG
ATGGAAGAGCATGTTGCTGCGGGAATACTTAATGCAAAAACTAACTGGCGTGATTATTGC
ATTAAGGTCAAAGATTTACCTGCATATCTGGCTGTCTCATCAAATACCTCAGGGCCAAAA
GCAAAAGACTTATTTCAAGATGTTTTTGATGAGCTGGAGAAACAGTTTGTCTTTGAAGAG
TTACTGGAAAGGGCCAGGGAGAGAGAAGAAAAAGAAGCTAAAAGACGTAAACGTCTAGCA
GATGAATTCTATGAACTTCTGCATACATCAAAGGAAATTACTGCATCATCAAAATGGGAG
GATTGCAAATCCATCTTCGGAGATAGAATAATGGGCGAAGAGAGCTTTCTTCTGGAAATA
TTTGACAAATTCATTAGTGAACTAAAAGAAAAGGCAAAAGAGAAGGAGCGGAAGCGGCAA
GAGGATAAGGCAAGAAAAGAGAAGGAAAGGAAAGATAGAGAAAAGAAGAAGGAAAAGCAT
AGAAGGGATAAAGACAGAGGGGATAAAAGCAGAAAAGAGAGGGAAAGAACCAAGAAAGAT
GGCACAGACAGCGAGAAGGCTGATACATACAGTTTCGAGGAGATCAAAAGGTTAGGAAGT
GACAGAGATAAGAAACACCGCAAGCGGCATATGAGTTCCTTTGATGACAATGAAAATGAG
AAAGATCATTCAAGAAATTCTTACAGACATGATAATGATCATAAGAAGTCAAAACAGGTC
GACCAGCACGTGTGGAGTTCTGAAGTTAATTCTGAGGGCCAGCATAAGAAACAAAAGCGA
GATCATCGGAGTGGTTCTCTTAGGGATGGTGACAATGAGGATCATAAAGATGGGGAATTT
GGTGAGGATGGAGAAGTTCGGTAG

Peptide Sequence

PEP ID

XP_016479335.1
PEP Infomation

PREDICTED: pre-mRNA-processing protein 40A-like isoform X3 [Nicotiana tabacum]
Sequence

MPDEVKLARQSMKVDLVKGLGKERDSISHASDFGSISGVKTSPLSANGSPVSAQGAMSSP
IAVAPVSNLPTIVASESSSLSGNISSLTIGAVEMQNSLEPASPAVATSEKNGTAVTLENS
VATPVTSSEFPSAQDSVVYEDGVSLENTEEVKKDATVSETGSATPSEEKTVEPGPLVYES
KAEAKSAFKILLESANIGSDWTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSHKKKLE
AEERRIKQKKAREDFRIMLEECKELAPSTRWSKAISIFEHDERFKAVERAKDREDLFEDY
MEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEDDERCSCLEKIDR
LEIFQEYIRDLEREEEEHRKLRMDEMRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYC
IKVKDLPAYLAVSSNTSGPKAKDLFQDVFDELEKQFVFEELLERAREREEKEAKRRKRLA
DEFYELLHTSKEITASSKWEDCKSIFGDRIMGEESFLLEIFDKFISELKEKAKEKERKRQ
EDKARKEKERKDREKKKEKHRRDKDRGDKSRKERERTKKDGTDSEKADTYSFEEIKRLGS
DRDKKHRKRHMSSFDDNENEKDHSRNSYRHDNDHKKSKQVDQHVWSSEVNSEGQHKKQKR
DHRSGSLRDGDNEDHKDGEFGEDGEVR

Transcript Sequence

Gene sequence data has not been registered.